NASC Stock Detail Page
NASC ID: N586177
Name: SALK_086177
ABRC stock number: SALK_086177
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At5g49820 K21G20. 3 R300-5' K21G20. 3 R300-5'. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_086177.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G49820.1 (at chr 5 pos 20249728 (W/20249679-20249728) on the TAIR10). The sequences' 1-50 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 75, R 73, C 71 N 72. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO424991. SALKseq_086177.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G25360.1 and AT2G25370.2=P355 (at chr 2 pos 10806184 (W/10806127-10806184) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 52-78 bps onto the T-DNA. Pools P 75, R 73, C 71 N 72. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO438231. SALKseq_086177.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G41890.1 and AT2G41900.1=P355 (at chr 2 pos 17486945 (W/17486878-17486945) on the TAIR10). The sequences' 1-69 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 75, R 73, C 71 N 72. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO418358. SALKseq_086177.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G55080.1 (at chr 3 pos 20415820 (W/20415765-20415820) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 75, R 73, C 71 N 72. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO421674.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_086177
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663186 (SALK_086177C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.