NASC Stock Detail Page
NASC ID: N553827
Name: SALK_053827
ABRC stock number: SALK_053827
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.March 2002 TAIR gene annotation: MQD17.1 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At3g15560 Associated Polymorphisms: SALKseq_053827.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G15550.1 (at chr 3 pos 5269342 (C/5269342-5269402) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 58-86 bps onto the T-DNA. Pools P 26, R 27, C 28 N 25. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO365399. SALKseq_053827.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G02260.1 and AT3G02270.1 (at chr 3 pos 448698 (C/448698-448776) on the TAIR10). The sequences' 1-79 bps mapped on the genome, 77-95 bps onto the T-DNA. Pools P 26, R 27, C 28 N 25. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO362048. SALKseq_053827.101 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G20460.1 (at chr 3 pos 7137736 (C/7137736-7137794) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 78-95 bps onto the T-DNA. Pools P 26, R 27, C 28 N 25. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO368743.
Donation Date: 2002-03-21
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_053827
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N653211 (SALK_053827C).
Status | Price (£) |
---|---|
Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
---|---|---|---|
|
|
|
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.